I ran into the issue of my map cycle not saving all the maps to the cycle. After reading here about using the basic editor, I tried that but it still wouldn't save all the maps to one cycle.
I have found a solution to this problem though. If you open config/KFWeb.ini and change under ​​​​​​​[IpDrv.WebConnection] to the following, you will be able to add more maps to a single cycle. I have not noticed any negative effects on the server from this.
Change:
MaxValueLength=4096
MaxLineLength=4096
To this:
MaxValueLength=8192
MaxLineLength=8192
Hope this will help everyone who likes to have lots of custom maps like myself.